It follows the story of a fairy named Mi who is sent to Planet Pandasia to warn the residents about a great evil that threatens to destroy Pandasia. She chooses a heroic panda named Toby to defeat Gold and Silver, two villains who want to collect the seven Beans of Power and rid Pandasia of its colorful, beautiful environment and replace it with a dark wasteland.

Akira Akebono, a young boy who is competing in a robot tournament where many of the robots are capable of transforming into animal forms. Akira wants to win the ultimate prize, the Titan Belt, with the help of his group of robots, all of which are capable of forming into the robot Daigunder. Daigunder is the creation of Akira's father, Professor Hajime Akebono. Together with a girl named Haruka, they compete under the name of Team Akira. However, Team Akira faces opposition from not only their competition, but a robot named Ginzan who is under the control of the evil Professor Maelstrom.

Ichigo Momomiya expected her date with her crush, Masaya Aoyama, to have a more romantic ending than her falling asleep after she sees a vision of a cat entering her body. Things get even stranger when, the next day, she begins displaying cat-like behaviors such as an intense craving for fish. When Masaya is attacked by a monster, she discovers that she is able to transform into the cat-eared magical girl, Mew Ichigo. After she saves Masaya, two researchers named Ryou Shirogane and Keiichiro Akasaka approach her and reveal they had injected her with Iriomote Cat DNA in order to create a magical girl that can save the world from aliens. Ichigo is tasked with fighting these monsters, but saving the world proves to be just too much for Ichigo to handle by herself. Fortunately, she learns that there are four other girls just like her, and now, Ichigo must find them quickly before the aliens completely take over the planet.

Action Duels, which allow duelists to soar and swing alongside their Duel Monsters, are taking the world by storm. Due to an evolutionary breakthrough, the "Solid Vision" system is now able to provide Duel Monsters with mass. Yuuya Sakaki is Yuusho Sakaki's son, the latter being the founder of You Show Duel School in Miami City. Yuusho insists that duels are not a tool of war, but rather are to bring smiles to people and thus introduced the concept of Entertainment Dueling. However, at the height of his fame, Yuusho disappears and fails to attend his duel with Strong Ishijima, the Action Duel champion. Although scarred by this sudden leave, Yuuya vows to become an Entertainment Duelist like his father. Several years later, in the midst of a battle with Strong Ishijima, Yuuya's desperation to win brings forth a miracle. His pendant begins glowing, turning his cards into Pendulum Cards, which enables him to perform a Pendulum Summon—a summoning method unknown to the world and himself—gaining him fame overnight. As a result, Reiji Akaba, CEO of Leo Corporation and founder of the elite Leo Duel School, starts producing new Pendulum Cards to incorporate Pendulum Summoning into the system. Thus, the mysteries that surround Pendulum Summoning and Yuuya's father start to unravel, and Yuuya learns bit by bit what it takes to become an Entertainment Duelist.